rs31818533 SNP Detail

Summary

• ID
  rs31818533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:93319714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGG CAGAAACTTG AGTGAGCATC
  Y
  GAGATAGCTT TTCCCCTCCT ATGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46607509	NES10423977	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T	T	T	C	T	T	C		T	T	C		T
ss148845506	ENSMUSSNP6406694	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss321614730	CHEV_5_93600881	CHEVERUD	SCREENING_POP	f	SNP												T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31818533					SNP	C	C	C	T	T	T	T	C	T	T	C	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46607509	NES10423977	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:93319714 () rs orientation: forward

Symbol	Name	Function Class
Rr114906	regulatory region 114906	1114 bp distal
Rr130579	regulatory region 130579	287 bp proximal
Septin11	septin 11	within coordinates
Tssr47365	transcription start site region 47365	1889 bp downstream
Tssr47366	transcription start site region 47366	469 bp downstream
Tssr47367	transcription start site region 47367	617 bp upstream
Tssr47368	transcription start site region 47368	909 bp upstream
Tssr47369	transcription start site region 47369	937 bp upstream
Tssr47370	transcription start site region 47370	1080 bp upstream
Tssr47371	transcription start site region 47371	1139 bp upstream
Tssr47372	transcription start site region 47372	1172 bp upstream
Tssr47373	transcription start site region 47373	1207 bp upstream
Tssr47374	transcription start site region 47374	1729 bp upstream
Tssr47375	transcription start site region 47375	1822 bp upstream