rs31818655 SNP Detail

Summary

• ID
  rs31818655
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:101314389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGTT TCCTTTCTAT TGAAGAGGGC
  R
  TTGAAGTAGG TAGGGCCTTT CTAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47092557	NES11616002	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	A	G	A	G	G	A	G	G	A	G
ss145557416	ENSMUSSNP2921916	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31818655					SNP	G	G	G	G	G	G	A	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47092557	NES11616002	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101314389 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Clpb	ClpB caseinolytic peptidase B			Intron
				Noncoding-Transcript-Variant
Cpgi19507	CpG island 19507			924 bp distal
Rr381220	regulatory region 381220			1647 bp upstream
Rr400489	regulatory region 400489			1384 bp downstream
Rr652443	regulatory region 652443			1399 bp distal
Rr652444	regulatory region 652444			1203 bp distal
Rr652445	regulatory region 652445			1149 bp distal
Rr652446	regulatory region 652446			1324 bp proximal
Rr652447	regulatory region 652447			1579 bp proximal
Tssr68257	transcription start site region 68257			1569 bp downstream
Tssr68258	transcription start site region 68258			1565 bp downstream
Tssr68259	transcription start site region 68259			1503 bp downstream
Tssr68260	transcription start site region 68260			1448 bp downstream
Tssr68261	transcription start site region 68261			1392 bp downstream