rs31818658 SNP Detail

Summary

• ID
  rs31818658
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101314425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTGTAAAT CTGGACTCTT AATCCTTCTT TGCTGCCCTG
  CGTTTCCTTT CTATTGAAGA GGGCGTTGAA GTAGGTAGGG CCTTTCTAGT TTAAGCATGC
  R
  GGAATTGTAT GGTTTCCGCT TGTGCAAACA TGAAGGTGGC ACTGTGCTTA GCTTGGACCT
  AGGTGTTCAG AAAATCCCAA CTTAAAACCT AGCCAGCTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47092560	NES11616003	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	A	G	A	G	G	A	G	G	A	G
ss145557419	ENSMUSSNP5887674	ENSEMBL	ENSEMBL_Sanger	f	SNP	G							A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31818658					SNP	G	G	G	G	G	A	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47092560	NES11616003	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101314425 () rs orientation: forward

Symbol	Name	Function Class
Clpb	ClpB caseinolytic peptidase B	within coordinates
Cpgi19507	CpG island 19507	960 bp distal
Rr381220	regulatory region 381220	1611 bp upstream
Rr400489	regulatory region 400489	1420 bp downstream
Rr652443	regulatory region 652443	1435 bp distal
Rr652444	regulatory region 652444	1239 bp distal
Rr652445	regulatory region 652445	1185 bp distal
Rr652446	regulatory region 652446	1288 bp proximal
Rr652447	regulatory region 652447	1543 bp proximal
Tssr68257	transcription start site region 68257	1605 bp downstream
Tssr68258	transcription start site region 68258	1601 bp downstream
Tssr68259	transcription start site region 68259	1539 bp downstream
Tssr68260	transcription start site region 68260	1484 bp downstream
Tssr68261	transcription start site region 68261	1428 bp downstream