rs31819153 SNP Detail

Summary

• ID
  rs31819153
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53859450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGAACACCA CTCTCCAGCC AAGGGAACCC GGCTCACAGG
  ACTCCTGTTT GCAGAGAGCT GGGCACTTCT CTGTGCTGCT GCCTCATATG GCATCTTTTT
  W
  TTAACCTCCT GTTTCATGTG TTTATTTTCC CAGTAAGCTT TTTTTTTCTT TCCCTCCCCG
  TATCAGTTAC CAACTAGTTC TAGACCCATG GTTGCAAGAA                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss47092478	NES11250510	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs31819153					SNP	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47092478	NES11250510	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53859450 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr260842	regulatory region 260842	551 bp proximal
Rr267638	regulatory region 267638	within coordinates