rs31819266 SNP Detail

Summary

• ID
  rs31819266
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:93319938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG ATCTCAAAGA ACACCTCATT
  Y
  GGTACTGCTT GGCTAAAGAA TCTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45772126	mCV22947446	ABI	CRAMUS_MOUSE	f	SNP		T					T		C
ss46607512	NES10423981	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C		C	C	C	T		C	C	C	C		C
ss321614732	CHEV_5_93601105	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31819266					SNP	C	T	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46607512	NES10423981	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:93319938 () rs orientation: forward

Symbol	Name	Function Class
Rr114906	regulatory region 114906	1338 bp distal
Rr130579	regulatory region 130579	63 bp proximal
Septin11	septin 11	within coordinates
Tssr47366	transcription start site region 47366	693 bp downstream
Tssr47367	transcription start site region 47367	393 bp upstream
Tssr47368	transcription start site region 47368	685 bp upstream
Tssr47369	transcription start site region 47369	713 bp upstream
Tssr47370	transcription start site region 47370	856 bp upstream
Tssr47371	transcription start site region 47371	915 bp upstream
Tssr47372	transcription start site region 47372	948 bp upstream
Tssr47373	transcription start site region 47373	983 bp upstream
Tssr47374	transcription start site region 47374	1505 bp upstream
Tssr47375	transcription start site region 47375	1598 bp upstream