rs31819267 SNP Detail

Summary

• ID
  rs31819267
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:93320011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TTTGGTTAAG GAGGCTGGAT TCCCACTTCC CTCCAGCCTC TCTGCACACA
  Y
  ACCTGCATTT GCTTTAAGCA GGCTGAGGGG GGACTTGGAG GCTGACTCTA           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46607513	NES10423982	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31819267					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46607513	NES10423982	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:93320011 () rs orientation: forward

Symbol	Name	Function Class
Rr114906	regulatory region 114906	1411 bp distal
Rr130579	regulatory region 130579	within coordinates
Septin11	septin 11	within coordinates
Tssr47366	transcription start site region 47366	766 bp downstream
Tssr47367	transcription start site region 47367	320 bp upstream
Tssr47368	transcription start site region 47368	612 bp upstream
Tssr47369	transcription start site region 47369	640 bp upstream
Tssr47370	transcription start site region 47370	783 bp upstream
Tssr47371	transcription start site region 47371	842 bp upstream
Tssr47372	transcription start site region 47372	875 bp upstream
Tssr47373	transcription start site region 47373	910 bp upstream
Tssr47374	transcription start site region 47374	1432 bp upstream
Tssr47375	transcription start site region 47375	1525 bp upstream