rs31819344 SNP Detail

Summary

• ID
  rs31819344
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101314805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA AGGGAGACAT TCACATGTGG
  K
  CCTTGGATTG GATTGGATTC CATTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47092566	NES11616005	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	G	T		G	T	G	G		T
ss145557426	ENSMUSSNP5967662	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss322351567	CHEV_7_108814112	CHEVERUD	SCREENING_POP	f	SNP								G					T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31819344					SNP	G	G	G	G	G	G	T	G	G	T	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47092566	NES11616005	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101314805 () rs orientation: forward

Symbol	Name	Function Class
Clpb	ClpB caseinolytic peptidase B	within coordinates
Cpgi19507	CpG island 19507	1340 bp distal
Rr381220	regulatory region 381220	1231 bp upstream
Rr400489	regulatory region 400489	1800 bp downstream
Rr652443	regulatory region 652443	1815 bp distal
Rr652444	regulatory region 652444	1619 bp distal
Rr652445	regulatory region 652445	1565 bp distal
Rr652446	regulatory region 652446	908 bp proximal
Rr652447	regulatory region 652447	1163 bp proximal
Tssr68257	transcription start site region 68257	1985 bp downstream
Tssr68258	transcription start site region 68258	1981 bp downstream
Tssr68259	transcription start site region 68259	1919 bp downstream
Tssr68260	transcription start site region 68260	1864 bp downstream
Tssr68261	transcription start site region 68261	1808 bp downstream