rs31819347 SNP Detail

Summary

• ID
  rs31819347
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:101314988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCA GTGAAGAGCC ATGGTCATAG
  R
  GACAGACTGT CTAGCAGCCA GTGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47092569	NES11616006	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G	A	G	A	G	G	A	G	G	A	G
ss145557428	ENSMUSSNP689429	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G						A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31819347					SNP	G	G	G	G	G	A	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47092569	NES11616006	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101314988 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Clpb	ClpB caseinolytic peptidase B			Intron
				Noncoding-Transcript-Variant
Cpgi19507	CpG island 19507			1523 bp distal
Rr381220	regulatory region 381220			1048 bp upstream
Rr400489	regulatory region 400489			1983 bp downstream
Rr652443	regulatory region 652443			1998 bp distal
Rr652444	regulatory region 652444			1802 bp distal
Rr652445	regulatory region 652445			1748 bp distal
Rr652446	regulatory region 652446			725 bp proximal
Rr652447	regulatory region 652447			980 bp proximal
Tssr68261	transcription start site region 68261			1991 bp downstream