rs31819350 SNP Detail

Summary

• ID
  rs31819350
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101315116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAA TTTCAGTGAT GTCCATCTAA
  Y
  AGAAGAGATG ATGACATAAA GCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47092572	NES11616007	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	C	C	T		C	T	C	C		T
ss145557432	ENSMUSSNP6395786	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C
ss322351568	CHEV_7_108814423	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31819350					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47092572	NES11616007	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101315116 () rs orientation: forward

Symbol	Name	Function Class
Clpb	ClpB caseinolytic peptidase B	within coordinates
Cpgi19507	CpG island 19507	1651 bp distal
Rr381220	regulatory region 381220	920 bp upstream
Rr652444	regulatory region 652444	1930 bp distal
Rr652445	regulatory region 652445	1876 bp distal
Rr652446	regulatory region 652446	597 bp proximal
Rr652447	regulatory region 652447	852 bp proximal