rs31820118 SNP Detail

Summary

• ID
  rs31820118
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:93454685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTG GATCCTTAGT AACTTTAGAC
  R
  TTTTGGAAGT TACTATTTTT TTAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46608121	NES10437679	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	G	G		A		A	G	G		G
ss148847038	ENSMUSSNP254263	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				G
ss321615099	CHEV_5_93735852	CHEVERUD	SCREENING_POP	f	SNP								G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31820118					SNP	A	A	G	G	G	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46608121	NES10437679	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:93454685 () rs orientation: forward

Symbol	Name	Function Class
Gm72287	predicted gene, 72287	332 bp upstream
Tssr51943	transcription start site region 51943	394 bp upstream
Tssr51944	transcription start site region 51944	379 bp upstream
Tssr51945	transcription start site region 51945	368 bp upstream