rs31821484 SNP Detail

Summary

• ID
  rs31821484
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:102696277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGCCTTG TTTTCTTGGA
  AGAGGTATTC TATGGGTCTT GGTTCTCTGT AATAATAAAG AAGGGTCTGG ATTCTGTCAA
  AGAAAACTAG AGTTGGACAT TGGAGTGATG ATAAAGATAA ATATTGTTAA GAAATTTGCA
  GTAGAACAAA AGAGAGATCT CAGTATGGGG CTGGGCTCAA TGACGAATAG AGGAAAGACA
  S
  CCAGGAATTT ACAGTTAAGA AGCAATGTGT CAGGAAGGGC CTGAAGGCCA GGGTGGTGGT
  TACACTGAGT GGATTGAACA TGTTACTAGA GAGCCCAGCA AATGTAGGGG AGAGTCTTGC
  TTACCTGACC AGATAAGATT TTCTTCTTTC TTTTTTCGTT TTGTTGTTGT TGTTGTTTTT
  GTTTTTGTTC TTGTTTTTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49778921	NES12400099	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31821484					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49778921	NES12400099	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:102696277 () rs orientation: forward

Symbol	Name	Function Class
Rr8948	regulatory region 8948	124 bp proximal