rs31821485 SNP Detail

Summary

• ID
  rs31821485
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:102696213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTGGGCA TAGTTTAGTA
  CTACAGCATG CAGGAGGCTT TGGGTATGAT CTTGCTGCAC CATGCTGTGC CTTGTTTTCT
  TGGAAGAGGT ATTCTATGGG TCTTGGTTCT CTGTAATAAT AAAGAAGGGT CTGGATTCTG
  TCAAAGAAAA CTAGAGTTGG ACATTGGAGT GATGATAAAG ATAAATATTG TTAAGAAATT
  Y
  GCAGTAGAAC AAAAGAGAGA TCTCAGTATG GGGCTGGGCT CAATGACGAA TAGAGGAAAG
  ACACCCAGGA ATTTACAGTT AAGAAGCAAT GTGTCAGGAA GGGCCTGAAG GCCAGGGTGG
  TGGTTACACT GAGTGGATTG AACATGTTAC TAGAGAGCCC AGCAAATGTA GGGGAGAGTC
  TTGCTTACCT GACCAGATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49778922	NES12400098	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31821485					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49778922	NES12400098	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:102696213 () rs orientation: forward

Symbol	Name	Function Class
Rr8948	regulatory region 8948	188 bp proximal