rs31821538 SNP Detail

Summary

• ID
  rs31821538
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91179028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCG ATCTGTTTCT TTCAGCTTGG
  R
  AGGTTAAACG GCCCTAGTGG CCCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45073474	mCV25408060	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss144943443	ENSMUSSNP3474937	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss319839837	CHEV_1_93147883	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31821538					SNP	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91179028 () rs orientation: forward

Symbol	Name	Function Class
Cpgi571	CpG island 571	215 bp distal
Rr366958	regulatory region 366958	1060 bp downstream
Tssr8065	transcription start site region 8065	1090 bp downstream
Tssr8066	transcription start site region 8066	996 bp downstream
Tssr8067	transcription start site region 8067	926 bp downstream
Tssr8068	transcription start site region 8068	798 bp downstream
Tssr8069	transcription start site region 8069	720 bp downstream
Tssr12938	transcription start site region 12938	1231 bp upstream
Tssr12939	transcription start site region 12939	66 bp downstream
Ube2f	ubiquitin-conjugating enzyme E2F (putative)	within coordinates