rs31821617 SNP Detail

Summary

• ID
  rs31821617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:153362454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAC AAGATTTCTA TGTGTAGTAG
  Y
  CCCGGACTCA AGAGATCGAA CAATA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45074500	mCV25366482	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss145743740	ENSMUSSNP700010	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31821617					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153362454 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi867	CpG island 867			74 bp proximal
Dhx9	DExH-box helicase 9			Intron
				Noncoding-Transcript-Variant
Rr396394	regulatory region 396394			812 bp upstream
Rr420681	regulatory region 420681			1175 bp distal
Rr420682	regulatory region 420682			within coordinates
Rr420683	regulatory region 420683			455 bp distal
Rr420684	regulatory region 420684			806 bp proximal
Rr420685	regulatory region 420685			890 bp proximal
Tssr9459	transcription start site region 9459			188 bp upstream
Tssr9460	transcription start site region 9460			1068 bp upstream
Tssr14270	transcription start site region 14270			931 bp downstream
Tssr14271	transcription start site region 14271			963 bp downstream
Tssr14272	transcription start site region 14272			976 bp downstream