rs31821770 SNP Detail

Summary

• ID
  rs31821770
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34144495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATAAATA CTTTCTGTAA
  GTATTAAAAA ATAAATCTGG GGGAGATGGC TCAATCCTTA AAGTGTGGTA GATAACTAAA
  TCCCACATTT AGAAAACCTG GATGTATTAG TGTGAACATG TAATCTCTGT AATAGGGAGG
  CTTGCCGGCA GCCAGTCTAA TCAAATTGTT GAGTTACAAG GTCAGAGAGA CCCTGCCTTT
  W
  TAAAGGTATG AAGAGTTATC TAAGAGGACA GCTGTGTTAA TCCCTGGTTT ACACACATGC
  ACACCTGCAC AAACAAATAC ATACTCATAA CTGGTCGGGG ATGTAACCCA GGCCTAGTAC
  ACAGTACAGC AGCGAGGATT CTTCTATGTT GATTCCTGGT TGGAAACAGA TGGTTTTCAC
  TTCACAATTC TTGTCAGCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39329369	mCV23546323	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	A
ss147538368	ENSMUSSNP3676402	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31821770					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34144495 () rs orientation: forward

Symbol	Name	Function Class
Mtdh	metadherin	812 bp downstream
Tssr131026	transcription start site region 131026	1819 bp downstream
Tssr131027	transcription start site region 131027	1384 bp downstream
Tssr131028	transcription start site region 131028	1245 bp downstream
Tssr131029	transcription start site region 131029	421 bp downstream