rs31821965 SNP Detail

Summary

• ID
  rs31821965
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:53860631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCACCTTA CTGCAGGAGG
  ATAGAAATCC TCCCAGACAG AGCCCCCAGA GCAGCTTCAG TGTGACTTGC ACCCTAAACA
  GAGCCCATCT CAAGAGCCAG CTTGGTGCCC TGATGAAGTT CGGAGTCTGT TGTATGGAAG
  TGTGCCTGCC TACACCGAAA CTGCAGCCAG AAGCCCCCGA TTCTTCTCCT GACCACGCCA
  K
  AACACAGTGC TGTAGAATAT GTGGTCATGT CATGTATGCC TACCTATCTC TGCCTATTTC
  TTTCACATAC ATGTGTACAC ACACTTGCTT AAGTTCAGGG AGGGTCATTC ATCAGCCATC
  TTTGCCAGCA GTGTACAATT TCACCTTAAA ATTATAATTC AGAGGCCCTG TGACTTTCCC
  TGGGATCCTG CCTCTGTTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47092505	NES11250545	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31821965					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47092505	NES11250545	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:53860631 () rs orientation: forward

Symbol	Name	Function Class
Npas3	neuronal PAS domain protein 3	within coordinates
Rr260842	regulatory region 260842	431 bp distal
Rr267638	regulatory region 267638	1032 bp distal