rs31822531 SNP Detail

Summary

• ID
  rs31822531
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135253258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGGG GAAAAAGGGA GCTGAGGCTG
  W
  GAGGTGTCCT TGAAGAGTTC ACTGT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45074515	mCV23633441	ABI	CRAMUS_MOUSE	f	SNP		T				A		T
ss51380628	NES14469653	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		T	T	T	T		T	T	A		T
ss145530776	ENSMUSSNP5552183	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						T
ss319989137	CHEV_1_137222097	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31822531					SNP	T	T	T	T	T	A	T	T	T	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51380628	NES14469653	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135253258 () rs orientation: forward

Symbol	Name	Function Class
Gm41956	predicted gene, 41956	854 bp upstream
Lmod1	leiomodin 1 (smooth muscle)	within coordinates
Tssr8958	transcription start site region 8958	700 bp downstream
Tssr8959	transcription start site region 8959	664 bp downstream