rs31822545 SNP Detail

Summary

• ID
  rs31822545
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:102677963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTCCTTC ACTTCCCTTT
  TTAAAGCATG CTTTTCTTCA CAGTGTCCTG TCATGTTTAG TGTCTTCACC TCCTGCCTTC
  AGTTGACTCT CCCCACTCCA CCCTCCTTCT CTCCATTCTC CAGGTACCTG CTGAACTTTC
  ACAGTTTGCC TGCCCTGAGG TGTTTTGCTG TTGTTGCTCT TTCCCTCCCT CTAATAAAAT
  Y
  AACCCCGTGA TTCCAAATAA ATATACTTCA GAGATCAAAA TAATATTTAC AATCAGGAGT
  TTTCTGAAAA GCACACTTTC ATAGACATAA AAACATGTAA TTTGGGGCTG GGGAGTGCAG
  CTTCATGGTA GAGTTCTTGC TTAGCATGTG CAAGGTATTG TATTCCATCC TCAGCACTAG
  AAAACAAACA ACAGCAATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49778933	NES12394152	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31822545					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49778933	NES12394152	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:102677963 () rs orientation: forward

Symbol	Name	Function Class
Rr6311	regulatory region 6311	127 bp distal