rs31822546 SNP Detail

Summary

• ID
  rs31822546
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:102676718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTTTTGC AGATGGTTGA
  GAAGTGCCCA ACATGGGTCT TTAGAAACAC CTTCTACAAG AGGAGCAAGT GGGCTTTATT
  ATTGAGATCT TTAGCCCCTA AACAAAAACC TGTAACAGCA TATAATGGAC TTACAGATAT
  CGATGATACA GTTTGGATTT ATATAGTTTT ACATACAAAA CAAAATATAA TCATTAAGTA
  Y
  AGTTTGAAGC TTTTAAAATG TTGAAAAATT CTTCAGAAGG CAGGATCTTA CAGACTGCAG
  CCATGTAGAG ACATGTTTAC TCGCTTTTTT TTGGGGGGGG GGGTTGAGAC AGGGTTTCTC
  TATAGCCCTG GCTGTCCTGG AACTCACTTT GTAGACCAGG CTGGCCTTGA ACTCAGAAAT
  CTGCCTGCCT CTGCCTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49778934	NES12394160	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31822546					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49778934	NES12394160	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:102676718 () rs orientation: forward

Symbol	Name	Function Class
Rr2455	regulatory region 2455	1918 bp distal
Rr6311	regulatory region 6311	628 bp proximal
Zcchc13	zinc finger, CCHC domain containing 13	1442 bp downstream