rs31822547 SNP Detail

Summary

• ID
  rs31822547
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:102675400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGGGGGC AAGAACATTT
  TGAGGAAGTA ACATTTCTTC AGAGACTTTT AGAGCAAATA AAAGTGTTTC TGAAAACATT
  GATGACTTTG ATAGCTTTTT ATATTTAGTT TTATTATATT GATAACTTTT AGATTATTTC
  ATTTTGTCAG CTTTTTGGTT GGTTGGTTTT ATTTTAAGTG ATTTTTTATT TTATCAAGAG
  Y
  TCAAGCCGGG CATGGTGGTG CACGCCTTTA ATCCCAGCAC TTGGGAGGCA GAGGCAAGCA
  GATTTCTGAG TTCGAGGCCA GCCTGGTCTA CAGAGTGAGT TCCAGGACAG CCAGGGCTAC
  ACAGAGAAAC CCTGTCTCGG GAGAAAAAAA AAGAGCTCAT GCTATCGCAG AATTGACCCC
  CTGAAGCATA CATCTCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49778935	NES12394173	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31822547					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49778935	NES12394173	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:102675400 () rs orientation: forward

Symbol	Name	Function Class
Rr2455	regulatory region 2455	600 bp distal
Rr6311	regulatory region 6311	1946 bp proximal
Tssr161729	transcription start site region 161729	1197 bp downstream
Tssr161730	transcription start site region 161730	1180 bp downstream
Zcchc13	zinc finger, CCHC domain containing 13	124 bp downstream