rs31822558 SNP Detail

Summary

• ID
  rs31822558
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124675562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCGC GGAGACAGAG TGAATCCATG
  R
  GTCCAATAAA GAGTTAAACA GAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss46226705	mCV24172824	ABI	CRAMUS_MOUSE	f	SNP	A	A				G		G
ss47593159	NES11190520	PERLEGEN	MM_PANEL2	f	SNP		A	G	G	G		G	G	G	A	A	G	G
ss145836526	ENSMUSSNP3255925	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A						G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs31822558					SNP	A	A	G	G	G	G	G	G	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47593159	NES11190520	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124675562 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21263	CpG island 21263	within coordinates
Gm45890	predicted gene 45890	within coordinates
Nup133	nucleoporin 133	within coordinates
Rr672577	regulatory region 672577	23 bp distal
Rr672578	regulatory region 672578	432 bp proximal
Rr672579	regulatory region 672579	452 bp proximal
Rr672580	regulatory region 672580	620 bp proximal
Rr672581	regulatory region 672581	1477 bp proximal
Tssr80007	transcription start site region 80007	587 bp upstream
Tssr80008	transcription start site region 80008	623 bp upstream
Tssr83414	transcription start site region 83414	378 bp downstream