rs31822560 SNP Detail

Summary

• ID
  rs31822560
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124675613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGCCCG ACACTGACCT
  GTGTCAACAT AATAAAGAAA TGACTTTTTA ATCTTTACAA TAATCTGAAG TATGTTCCTA
  CCTTGCAAGC GTAGTGCTCA AAAGGTTCTT TCATTCTTTT CTGTAGCGCG GAGACAGAGT
  GAATCCATGG GTCCAATAAA GAGTTAAACA GAGAACGGGC AAAACGAGGG CCACCATTAA
  R
  CAGCGACAAT AAAACGCGAG AATGACCAGA AGTACTTTCG AACTCTGCGG CAGCTTACCC
  CACTGCCAGG CTCCACCTCC CCGCTGTGGA GCGGACCCCG CTGGTCCCCG AACCCCCACT
  TACCGTGAGC TCACCGAGCT GCGCCGGCCT GCGGGCGAGA ACAGCACGGG CGAGTTAACC
  GCAGATCCCA GAGACAGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47593162	NES11190523	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31822560					SNP	A	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47593162	NES11190523	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124675613 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21263	CpG island 21263	within coordinates
Gm45890	predicted gene 45890	within coordinates
Nup133	nucleoporin 133	within coordinates
Rr672577	regulatory region 672577	74 bp distal
Rr672578	regulatory region 672578	381 bp proximal
Rr672579	regulatory region 672579	401 bp proximal
Rr672580	regulatory region 672580	569 bp proximal
Rr672581	regulatory region 672581	1426 bp proximal
Tssr80007	transcription start site region 80007	536 bp upstream
Tssr80008	transcription start site region 80008	572 bp upstream
Tssr83414	transcription start site region 83414	327 bp downstream