rs31822562 SNP Detail

Summary

• ID
  rs31822562
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124675643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAAGAAA TGACTTTTTA
  ATCTTTACAA TAATCTGAAG TATGTTCCTA CCTTGCAAGC GTAGTGCTCA AAAGGTTCTT
  TCATTCTTTT CTGTAGCGCG GAGACAGAGT GAATCCATGG GTCCAATAAA GAGTTAAACA
  GAGAACGGGC AAAACGAGGG CCACCATTAA GCAGCGACAA TAAAACGCGA GAATGACCAG
  M
  AGTACTTTCG AACTCTGCGG CAGCTTACCC CACTGCCAGG CTCCACCTCC CCGCTGTGGA
  GCGGACCCCG CTGGTCCCCG AACCCCCACT TACCGTGAGC TCACCGAGCT GCGCCGGCCT
  GCGGGCGAGA ACAGCACGGG CGAGTTAACC GCAGATCCCA GAGACAGACC CCTCCTGCTC
  GCTCTAGGCG TGGACGTGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47593165	NES11190525	PERLEGEN	MM_PANEL2	f	SNP	C	A	A	A	C	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31822562					SNP	C	A	A	A	C	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47593165	NES11190525	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124675643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21263	CpG island 21263	within coordinates
Gm45890	predicted gene 45890	within coordinates
Nup133	nucleoporin 133	within coordinates
Rr672577	regulatory region 672577	104 bp distal
Rr672578	regulatory region 672578	351 bp proximal
Rr672579	regulatory region 672579	371 bp proximal
Rr672580	regulatory region 672580	539 bp proximal
Rr672581	regulatory region 672581	1396 bp proximal
Tssr80007	transcription start site region 80007	506 bp upstream
Tssr80008	transcription start site region 80008	542 bp upstream
Tssr83414	transcription start site region 83414	297 bp downstream