rs31822589 SNP Detail

Summary

• ID
  rs31822589
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:102365138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTTGACG TCAGCCCAGC
  CTTTGGTAAC CCTCCTATGG CTCACTACCA GTCACCTGGA AATTTAGGGT AGGAAAGGAA
  GGATGGAGTA GTCCGAGCCG CGCAGAGGAG CTAGCAGCGC TACTAGTGCT GACCGTTGAT
  AGTCTCTTGC GTCTCAAACT CGGGTTGGCG CTAAGTTTAC AGGGACCTCA GGATGGCTTA
  R
  GGGGCAACTT CTTCTATCCA AGTCACCATG TATGGAAGCT GCCTTTTAGA AAAAGAAGCG
  GGCATGTACC CAGGCACTCT CAGGAGCCCT GGAGGAAGCA GTACAGCCGG AGTGGGCACC
  TCTGGGGGCA GTGGTAGTCC TCTGCCTGCC TCCAACTTTA CTGCAGCCCC AGTTTACCCA
  CACTACGTGG GTTACCCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49779145	NES12396551	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31822589					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49779145	NES12396551	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:102365138 () rs orientation: forward

Symbol	Name	Function Class
Cdx4	caudal type homeobox 4	within coordinates
Cpgi22884	CpG island 22884	310 bp proximal
Gm3931	predicted gene 3931	1967 bp downstream