rs31822683 SNP Detail

Summary

• ID
  rs31822683
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156046684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAA AGAATCACTG GTCATAGGGG
  Y
  CCCGCCCCGC CCTGCCCCGC CCCGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45574739	mCV22553943	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss321444095	CHEV_4_155336336	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31822683					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156046684 () rs orientation: forward

Symbol	Name	Function Class
C1qtnf12	C1q and tumor necrosis factor related 12	91 bp upstream
Cpgi15495	CpG island 15495	77 bp proximal
Gm42365	predicted gene, 42365	517 bp upstream
Gm68249	predicted gene, 68249	within coordinates
Rr606619	regulatory region 606619	within coordinates
Rr606620	regulatory region 606620	886 bp proximal
Rr606621	regulatory region 606621	1194 bp proximal
Tssr40744	transcription start site region 40744	65 bp upstream
Tssr40745	transcription start site region 40745	115 bp upstream
Tssr40746	transcription start site region 40746	184 bp upstream
Tssr40747	transcription start site region 40747	314 bp upstream