rs31823054 SNP Detail

Summary

• ID
  rs31823054
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101311019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTATTCCT AACAGTGTAA
  CACTATTACA AAAGGAAACC AAATATGGAA GAGGCTAGAA GGTCATCTAC ACACCCACAT
  CATGAAAGGA GTTTAAATAA TATAGCATTT CCATCCAGAG CAACACAGGC TTTGCTGAGG
  GTCCTTGGTG CAATTGGGTA AATTCAAAAG AGATCAATAA CCAGAAATAA AATGTAAAGT
  M
  ATGCATGAGT GTGTGATTGC TTCATGATCT GGGCATGAGA AATCCTTCCT AAATACTGTC
  AGAGATTCCA TAGAAGTAGA GGTAATGTCA AAGTGGCAAA TTGAAAAGAA ACACCTGCAA
  GGTTTTTTTT TTTTAAGTTT GTTTGTTTGT GTGTTTGGGT TTTTTTGTTT TGTTTTGTGT
  TTTTTTGTTT TTGCTTTTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47092518	NES11616079	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31823054					SNP	C	C	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47092518	NES11616079	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101311019 () rs orientation: forward

Symbol	Name	Function Class
Clpb	ClpB caseinolytic peptidase B	1939 bp upstream
Cpgi19507	CpG island 19507	1748 bp proximal
Rr400489	regulatory region 400489	1685 bp upstream
Rr652442	regulatory region 652442	388 bp proximal
Rr652443	regulatory region 652443	1331 bp proximal
Tssr68257	transcription start site region 68257	1791 bp upstream
Tssr68258	transcription start site region 68258	1802 bp upstream
Tssr68259	transcription start site region 68259	1823 bp upstream
Tssr68260	transcription start site region 68260	1915 bp upstream
Tssr68261	transcription start site region 68261	1929 bp upstream