rs31823574 SNP Detail

Summary

• ID
  rs31823574
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34997091 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGGGCCA CCTCTTAGGT
  CAGATGGAAG ATCTCAGAGC CAAGTCCTTC TACTCACGAG TAGAAGGACC GTTGGCCAAC
  AGCCCTTTCA CTTACCATCC CTGCCTCCCC CGTCCTGTTC CCTTTGACTT CAGCTGCCTG
  AAACAGCCAT GTCCAAGTTC TTCACCTCTA TCCAAAGGAC TTGATTTGCA TGGTATTGGA
  W
  AAATCATTTC AGTATCCTCT CCATCACATG CCTGGCCCTT GCTCCCTTCA GCGCTAGACC
  ATCAAGTTGG CATAAAGAAA AAAAAATGGG TTTGGGCCCT CAGAACCCTG CCCTGCATCT
  TTGTACAGCA TCTGTGCCAT GGATTTTGTT TTCCTTGGGG TATTCTTGAT GTGAAGATAA
  TTTGCATACT CTATTGTATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49280162	NES12721375	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31823574					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49280162	NES12721375	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34997091 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9830	CpG island 9830	1238 bp distal
Egr1	early growth response 1	within coordinates
Rr535729	regulatory region 535729	998 bp proximal
Tssr150489	transcription start site region 150489	1557 bp downstream
Tssr150490	transcription start site region 150490	1517 bp downstream
Tssr150491	transcription start site region 150491	1468 bp downstream
Tssr150492	transcription start site region 150492	1422 bp downstream
Tssr150493	transcription start site region 150493	1340 bp downstream
Tssr150494	transcription start site region 150494	1073 bp downstream
Tssr150495	transcription start site region 150495	1019 bp downstream
Tssr150496	transcription start site region 150496	950 bp downstream
Tssr150497	transcription start site region 150497	779 bp downstream
Tssr150498	transcription start site region 150498	662 bp downstream
Tssr150499	transcription start site region 150499	533 bp downstream
Tssr150500	transcription start site region 150500	312 bp upstream
Tssr150501	transcription start site region 150501	617 bp upstream
Tssr152833	transcription start site region 152833	1317 bp upstream
Tssr152834	transcription start site region 152834	1224 bp upstream