rs31823576 SNP Detail

Summary

• ID
  rs31823576
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34996667 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAGACAG AAGGACAAGA
  AAGCAGACAA AAGTGTGGTG GCCTCCCCGG CTGCCTCTTC ACTCTCTTCT TACCCATCCC
  CAGTGGCTAC CTCCTACCCA TCCCCTGCCA CCACCTCATT CCCATCCCCT GTGCCCACTT
  CCTACTCCTC TCCTGGCTCC TCCACCTACC CATCTCCTGC GCACAGTGGC TTCCCGTCGC
  Y
  GTCAGTGGCC ACCACCTTTG CCTCCGTTCC ACCTGCTTTC CCCACCCAGG TCAGCAGCTT
  CCCGTCTGCG GGCGTCAGCA GCTCCTTCAG CACCTCAACT GGTCTTTCAG ACATGACAGC
  GACCTTTTCT CCCAGGACAA TTGAAATTTG CTAAAGGGAA TAAAAGAAAG CAAAGGGAGA
  GGCAGGAAAG ACATAAAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49280164	NES12721373	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C		C	C	C	C		C
ss325582613	CHEV_18_35023268	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31823576					SNP	T	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49280164	NES12721373	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34996667 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9830	CpG island 9830	814 bp distal
Egr1	early growth response 1	within coordinates
Rr535729	regulatory region 535729	1422 bp proximal
Tssr150489	transcription start site region 150489	1133 bp downstream
Tssr150490	transcription start site region 150490	1093 bp downstream
Tssr150491	transcription start site region 150491	1044 bp downstream
Tssr150492	transcription start site region 150492	998 bp downstream
Tssr150493	transcription start site region 150493	916 bp downstream
Tssr150494	transcription start site region 150494	649 bp downstream
Tssr150495	transcription start site region 150495	595 bp downstream
Tssr150496	transcription start site region 150496	526 bp downstream
Tssr150497	transcription start site region 150497	355 bp downstream
Tssr150498	transcription start site region 150498	238 bp downstream
Tssr150499	transcription start site region 150499	109 bp downstream
Tssr150500	transcription start site region 150500	736 bp upstream
Tssr150501	transcription start site region 150501	1041 bp upstream
Tssr152833	transcription start site region 152833	893 bp upstream
Tssr152834	transcription start site region 152834	800 bp upstream