rs31823577 SNP Detail

Summary

• ID
  rs31823577
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:34995450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGCTGGC GGGATTCCCT
  CGCCCGCGCA GCCTCGCTGC GGAGCGCTCT CGGAGCTGCA GTAGAGGGGG GATTCTCTGT
  TTGCGTCAGC TGTTGAAATG GGCTCTGCCA CTGGAGCAGG TCCAGGAACA TTGCAATCTG
  CTGCTATCAA TTATTAACCA CATCGGGAGT CAGTGGTAGC CGGGCGACCT CTTGCCAGGC
  Y
  GCTTCGGGTC TCATCGTCCA GTGATTCCTC TCCAGTAACC AGGCCTCTCT GTTCCCTTTC
  CTGCCAGAGT CCTTTTCTGA CATCGCTCTG AATAATGAGA AGGCGATGGT GGAGACGAGT
  TATCCCAGCC AAACGACTCG GTTGCCTCCC ATCACCTATA CTGGCCGCTT CTCCCTGGAG
  CCCGCACCCA ACAGTGGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49280165	NES12721523	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31823577					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49280165	NES12721523	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:34995450 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9830	CpG island 9830	within coordinates
Egr1	early growth response 1	within coordinates
Rr370358	regulatory region 370358	1059 bp downstream
Rr405587	regulatory region 405587	1430 bp downstream
Tssr150487	transcription start site region 150487	1410 bp downstream
Tssr150488	transcription start site region 150488	1182 bp downstream
Tssr150489	transcription start site region 150489	73 bp upstream
Tssr150490	transcription start site region 150490	99 bp upstream
Tssr150491	transcription start site region 150491	127 bp upstream
Tssr150492	transcription start site region 150492	199 bp upstream
Tssr150493	transcription start site region 150493	276 bp upstream
Tssr150494	transcription start site region 150494	532 bp upstream
Tssr150495	transcription start site region 150495	586 bp upstream
Tssr150496	transcription start site region 150496	659 bp upstream
Tssr150497	transcription start site region 150497	851 bp upstream
Tssr150498	transcription start site region 150498	963 bp upstream
Tssr150499	transcription start site region 150499	1097 bp upstream
Tssr150500	transcription start site region 150500	1953 bp upstream
Tssr152831	transcription start site region 152831	1971 bp upstream
Tssr152832	transcription start site region 152832	956 bp upstream
Tssr152833	transcription start site region 152833	310 bp downstream
Tssr152834	transcription start site region 152834	369 bp downstream