rs31823651 SNP Detail

Summary

• ID
  rs31823651
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124676753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGGCGTG CACACAGTTC
  TGTTAGTCCT CTGCGGCTGT TTCGGAAGAC CGTAGTGTGT GTATGGGGGT GTCTTTTCCA
  TTCTGCTCCC CACATTACTA AACAGTGAAC TGAGATTAGC CCGAGGCTGT ACTAGAGTTT
  GTAAATATTC AGGGCTGATA ACTGCCCAGG GACCCTTGCT GAACTTGTGA GGTCCCTTGT
  W
  ACTTCGGGTG GCCTTTCCTT TTCGGTTTTT TCATTGTGTC CCACTTAGAC AACATTGTAG
  CCAGACTTTT GACCACTTTA TGGGTTCCTA TTTCTACCAC TTGTCTCCCT CTCAACCCCC
  CAACACTAGG TAGGAGAAAG AAGGCTAGAG GAAAAGGGGG CTTCGATATC CGTAGACTAC
  TTCCTGCTGA TAGAGGCATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47593174	NES11190532	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	A	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31823651					SNP	T	T	T	T	T	T	T	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47593174	NES11190532	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124676753 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21263	CpG island 21263	144 bp distal
Gm45890	predicted gene 45890	within coordinates
Nup133	nucleoporin 133	749 bp upstream
Rr672577	regulatory region 672577	1214 bp distal
Rr672578	regulatory region 672578	572 bp distal
Rr672579	regulatory region 672579	718 bp distal
Rr672580	regulatory region 672580	within coordinates
Rr672581	regulatory region 672581	286 bp proximal
Tssr80007	transcription start site region 80007	577 bp downstream
Tssr80008	transcription start site region 80008	549 bp downstream
Tssr83414	transcription start site region 83414	727 bp upstream