rs31825092 SNP Detail

Summary

• ID
  rs31825092
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:102621939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATATCAA AGAGAATTTA
  ATCTGACTTT CCATAGATAA CCAACCCTTA CAAGATTGGT AGTGCTACTC TGATTCCCAA
  AGTTTTAAGG ACTGTTTTGC ATTTTGTGAT AAAATGATAA GATTTTTGCA TTTGTTGCCT
  ACTTGACCTT CCTTACATTT TACACAGTAT TGGGCAACTC TGATCACTCA TTACTTGTAA
  K
  GGAAAAATAT TCTGTATCAA AAAACAGGGA GGGCACTTAC ACATTACTGA GGCAATATTT
  CATGTGCTAG AATTTGAATT CAAAAATTAA GAAGGCAGTC ACCCACCTGC CTCAGTGACT
  TGAATGCAGA GGGAATGGGA AAGTAGCATT ATCCTTAATT AATCTGAGGG TGTGGGATGT
  GAGTGTGTGT GTGTGCGCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49778970	NES12394648	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31825092					SNP	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49778970	NES12394648	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:102621939 () rs orientation: forward

Symbol	Name	Function Class
Ftx	Ftx transcript, Xist regulator, non-protein coding	within coordinates
Rr6306	regulatory region 6306	1315 bp proximal