rs31825297 SNP Detail

Summary

• ID
  rs31825297
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:127703149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CAATAAACAC TGCGATTGTT TATATGCACA GGTTTTATAT GCACCATTCC TTCACCAAAT
  TCAACAGAAA TGTAAGTACT GTTTTATTGT TTTAGACGCC GAATGTTAAA ATGAGTAGAT
  AATGCGAAAA CAAGTTAGTT GATCGTTGTT TTTACTTATA AATTGAGCGT TCTACGTTTA
  CTATAAATGT GAGTTATGCA ATAAACGTTT TGCCTCGTGC AGAGGAGTGT GTGTGAGAGA
  GAATTTTATT AATTAAGCTG TAAAGCACAG TGTTAGCCTT TTGTTGTTGG ATTTGTTGGG
  G
  AGGGGGGTGT TGTTTTGTTT TGAGACAGGG TCTCACTTGT AAGTCTGGCT GTCCTGGACC
  TAAATATGTA GACCAGGCTG GCCTTGAACT CAAAAGAGAT ATCTACTACC TCTGACTCCC
  CAGTGCTTGG GATTAAGTAA TGTGCCACCA AGCCTGGCGG AGAAACAAAC AAAATGTTTC
  TTAACTCAAA AAGCGATAGT GTTTTGCTCA TGTAAAATTT GCAGTTGGGG TGATTTATAT
  TAGAATAATT TAAGTACTCA AAACAGAATA GTTTGTTTGG GCAAGTGTAG TCCTTGGGAA
                                                                   
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45074888	mCV25147571	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31825297					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:127703149 () rs orientation: forward

Symbol	Name	Function Class
2900009J06Rik	RIKEN cDNA 2900009J06 gene	1358 bp upstream
Ccnt2	cyclin T2	Intron
Cpgi690	CpG island 690	475 bp distal
Rr396250	regulatory region 396250	1270 bp downstream
Rr417683	regulatory region 417683	1558 bp distal
Rr417684	regulatory region 417684	1238 bp distal
Rr417685	regulatory region 417685	365 bp distal
Tssr8489	transcription start site region 8489	1174 bp downstream
Tssr8490	transcription start site region 8490	1140 bp downstream