rs31827147 SNP Detail

Summary

• ID
  rs31827147
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:93454170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATGTACAA CAGAGGGAGG
  CATCCAGGTC AGTGTGTGAT CCATCACTGC CTGTGTTCCA GTCTGCCATG CAAGGTACCA
  GACAAGTTAT CAGAAATATG TGAAATCTGT TTGCCAAAGA CAAGCTGTTC TTCTTGTTAC
  CACACTTCAG CCTTTTTCCT CTCAGAATGA AATTCCTGGA GAAATACCAA GTTGATGCAG
  M
  CCATTGTCAG AAAACTCTGA TGGCTAAAGG GAAGGCTAGG CGTATCTCTA GACTGTTTTT
  GTACCTGCCA GGATAGTCCC AGAGAGGACG CTTCTGGTCT TGAGAGTCCA AAAGTGTCTG
  TCCTGTGGAC TGCATCACAG CTCTGGGGAG GGGAGGGTGA AGATCAGGAG AAACACCAGG
  TTCTAGAACC AAGCAAGGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46608113	NES10437670	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31827147					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46608113	NES10437670	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:93454170 () rs orientation: forward

Symbol	Name	Function Class
Gm72287	predicted gene, 72287	within coordinates
Tssr51943	transcription start site region 51943	115 bp downstream
Tssr51944	transcription start site region 51944	127 bp downstream
Tssr51945	transcription start site region 51945	139 bp downstream