rs31827903 SNP Detail

Summary

• ID
  rs31827903
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135106994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCAAAAGA GACTAAAGTT AGACACAGAG
  ATCCAACCCC CTAGTTCTGC CCAGTTCTGT CACACCTTAG AATTGCGGCC CAGCTTCTGT
  TCCCCAGAAT AGGCAGGTCT AGATTGGCAG CCGAAGATCA GAGGACAAAT GACCTACAGA
  W
  GGACAGAATG ATCTCCAGCC GCAGTCGGAG CTTATTCCAA CACCACTGCC TGCTGTCCAC
  CCATCTGTGA GGAGAGAGCA CTCCCCTGGC TTTGTCTGCC CCATGGTCCT AATCATACCA
  TGTTAACACC CTGGTCTGTG TTAAGCAGTC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45074381	mCV25393330	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
ss145526711	ENSMUSSNP5451037	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T	A
ss319988312	CHEV_1_137075833	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31827903					SNP	T	T	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135106994 () rs orientation: forward

Symbol	Name	Function Class
Rr419094	regulatory region 419094	within coordinates
Rr419095	regulatory region 419095	1406 bp proximal
Tssr13831	transcription start site region 13831	1630 bp downstream