rs31829488 SNP Detail

Summary

• ID
  rs31829488
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:119392496 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATGAAAAA CTAACATTTA CTAGTCACTT CTTCAGCAAA
  TATTTAATTA GGATGGTGAC TTCTTTTAAA CAATTCTAGG TGGTAGACAT GTCTGCAACC
  Y
  GTATTTTATG CAAGAGAAAA GTAAATGATT TGCCTAAAGA TGGCCATAGT ATGTTAACCT
  TTGACAGGAC TTTTCACGCT TGAATCCTAT GCTATTCAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46073699	mCV24825116	ABI	CRAMUS_MOUSE	f	SNP		C					T		C
ss47184205	NES11599724	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	C		C	C	T	C	C	T	T	C	T
ss145815734	ENSMUSSNP5860117	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31829488					SNP	T	C	T	C	T	C	T	C	C	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47184205	NES11599724	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:119392496 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19637	CpG island 19637	394 bp proximal
Eri2	exoribonuclease 2	within coordinates
Rexo5	RNA exonuclease 5	733 bp upstream
Rr654660	regulatory region 654660	124 bp proximal
Rr654661	regulatory region 654661	684 bp proximal
Rr654662	regulatory region 654662	775 bp proximal
Rr654663	regulatory region 654663	1998 bp proximal
Tssr68757	transcription start site region 68757	468 bp upstream
Tssr68758	transcription start site region 68758	714 bp upstream
Tssr68759	transcription start site region 68759	748 bp upstream
Tssr68760	transcription start site region 68760	829 bp upstream
Tssr68761	transcription start site region 68761	995 bp upstream
Tssr74500	transcription start site region 74500	672 bp downstream
Tssr74501	transcription start site region 74501	685 bp downstream