rs31830050 SNP Detail

Summary

• ID
  rs31830050
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:91259409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATAACTA GGTAGGCTTT
  TCCATGAGAT GTCTGCTGGT CATTGTCACC TCTGCACCTG CTGGTAAATC CTGTTAGGTT
  GGTCAGCCTG GCTCCTTCAG TCTCCCTAGT GTGCTCACCA GTCTTGCGCC AAGGCCTCAG
  AGATTTTGGC CAGGCAAATG TATAACCACA GTACCACAGT GAGCTACCTA AGCCGGGCGA
  R
  CTAGCTGAAC CCGAAGCCTG CGAAGCAGAG CATCCGCGCT TCGCGCCACT AGCGCGCAGG
  CAGACCCGGG ATGCGACCGC CACCGGCTGC AACCTCGCTC AGCTGCGCCT ACCACGCAAA
  AGGGATCACC ACGGCTCCCG CCCCGAGCGC CCACGGCCTC ACGCTACCCC GGCACACCGC
  GTGGCCTCTC CAAGTCTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45575308	mCV23976691	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss146983079	ENSMUSSNP1428194	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31830050					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:91259409 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14444	CpG island 14444	within coordinates
Cpgi14445	CpG island 14445	1723 bp proximal
Elavl2	ELAV like RNA binding protein 1	within coordinates
Rr595258	regulatory region 595258	within coordinates
Rr595259	regulatory region 595259	473 bp proximal
Rr595260	regulatory region 595260	852 bp proximal
Rr595261	regulatory region 595261	1773 bp proximal
Tssr42416	transcription start site region 42416	774 bp downstream
Tssr42417	transcription start site region 42417	812 bp downstream
Tssr42418	transcription start site region 42418	856 bp downstream