rs31830089 SNP Detail

Summary

• ID
  rs31830089
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124794375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAC TAAAGCCCTG GATTAGAAAC
  Y
  TGACATTTTG CCTCCTTTTG GAAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46283009	mCV23473390	ABI	CRAMUS_MOUSE	f	SNP	C	T						C
ss47594329	NES11184797	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	C	C	C	C	C	C	C	T	C	C
ss145839263	ENSMUSSNP6132018	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31830089					SNP	C	T	C	T	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47594329	NES11184797	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124794375 () rs orientation: forward

Symbol	Name	Function Class
Gm29897	predicted gene, 29897	within coordinates
Rr672611	regulatory region 672611	391 bp distal
Tssr80018	transcription start site region 80018	848 bp downstream
Tssr80019	transcription start site region 80019	840 bp downstream
Tssr80020	transcription start site region 80020	497 bp downstream