rs31830565 SNP Detail

Summary

• ID
  rs31830565
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124773037 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAGCAAT GCTGATGAAG
  TAAGTGCACG AGAAGATATT TCTAGTGTTC CTAGGATGGC ACAAGGACTT GTAATTTGAT
  TTCCCTGAGT ATTTAGCAGT TTTATCGAAG CCTGATATTT CCCAAGCATG TGAGTCATTA
  ACACAGAAGC TTTTTATGAG AGAATAAAAT GAGGCATAGT AATTTAACTT TGCTGAGGGC
  Y
  AAAAAGTGAA GTGATAATTG GAACTCTTAA GTCATATTAT TCTAAGATTT ACTTTATGAA
  ATCTCTGGCT TCATTATTCA TCTCTAATTT AAACTTGTCC ATTTTTTCCT TTTTGTTTTG
  TTTTGTTTTG TTTTAATCTT GAAAATAGAA AGGCCTTGTG AATTATTTAA GACCATTACA
  TCCTAGAACC CATTGGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47594065	NES11185974	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T	T	C	T	T	T	C	T	C	C	T
ss145838742	ENSMUSSNP1661503	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31830565					SNP	T	C	T	C	T	T	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47594065	NES11185974	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124773037 () rs orientation: forward

Symbol	Name	Function Class
Gm45732	predicted gene 45732	within coordinates
Rr672609	regulatory region 672609	153 bp distal
Tssr80016	transcription start site region 80016	847 bp upstream
Tssr80017	transcription start site region 80017	1309 bp upstream
Urb2	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	within coordinates