rs31830644 SNP Detail

Summary

• ID
  rs31830644
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172154306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCA TAAATCTCAG AAAGTTGGGG
  S
  ACAGGTGCTG GGGAGATGGC TCAAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45075497	mCV24595302	ABI	CRAMUS_MOUSE	f	SNP	C	C	G	C
ss120009184	PARCsnp_1.18670	PARC_SEQ	INBRED	f	SNP			G	C
ss120012383	PARCsnp_1.08459	PARC_SEQ	INBRED	f	SNP			G	C
ss146187984	ENSMUSSNP1333331	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320124225	CHEV_1_174256870	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31830644					SNP	C	C	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172154306 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	within coordinates
Gm70847	predicted gene, 70847	within coordinates
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	1359 bp distal
Rr423525	regulatory region 423525	1813 bp distal
Rr423526	regulatory region 423526	1623 bp distal
Rr423527	regulatory region 423527	449 bp distal
Rr423528	regulatory region 423528	821 bp distal
Rr423529	regulatory region 423529	406 bp distal
Rr423530	regulatory region 423530	100 bp proximal
Rr423531	regulatory region 423531	1479 bp proximal
Tssr15210	transcription start site region 15210	514 bp upstream
Tssr15211	transcription start site region 15211	501 bp upstream
Tssr15212	transcription start site region 15212	484 bp upstream