rs31831357 SNP Detail

Summary

• ID
  rs31831357
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79327394 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGTG CTTTTTGGCT TTGCGTTTGT
  Y
  AATTGATTCA CAATTGGCAG GTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39330106	mCV25428808	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss148199929	ENSMUSSNP1239313	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss325027494	CHEV_15_79273623	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31831357					SNP	C	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79327394 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7334	CpG island 7334	557 bp distal
Csnk1e	casein kinase 1, epsilon	within coordinates
Rr505648	regulatory region 505648	1387 bp distal
Rr505649	regulatory region 505649	701 bp distal
Tssr135345	transcription start site region 135345	1334 bp upstream
Tssr135346	transcription start site region 135346	1128 bp upstream
Tssr135347	transcription start site region 135347	1087 bp upstream
Tssr135348	transcription start site region 135348	1069 bp upstream