rs31831579 SNP Detail

Summary

• ID
  rs31831579
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153628554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTCCCTG CAGTGGTGAG
  TGGGTGTGGG GGGAGTATTT GCTATATTCC CTAAGACACT GTCTGCAATG GCCCTGTTTA
  CTGTTGTCCT CCGATGAGGA AACAAAATTG TGAGTCAGCC ATTTATGAAT GTGCAATGAG
  GAAGTGACAG CCAAAAGTTG CATTCCCAGA AACTCAAAGC TGAGTTCGTA CTTCAACTTT
  Y
  TTTTTTCAAC CGCACTGCTT CAATAAAAAC TCGCAGGGGG ACGGAGAGAA CGAACAGAAA
  GAACAGTGTG TGGGGGTGAC CAGCCTCACC TGGGATAAAG TCAGATGGAC CAAGATTACC
  AGAAGGTGCC AATTACTAGG TAAGTACCAT TATAGAATAT TGGAGAAAGA AACAGTTAGT
  TTTCGTGACA TTTCGTGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45075411	mCV24629521	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					C		T
ss60819907	NES16430908	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		T	T	T	C	T	C	C	T	T
ss145749426	ENSMUSSNP2645813	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31831579					SNP	C	C	C	C	C	C	C	C	T	T	T	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60819907	NES16430908	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153628554 () rs orientation: forward

Symbol	Name	Function Class
Gm28512	predicted gene 28512	1044 bp downstream
Rnasel	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	within coordinates
Rr396400	regulatory region 396400	811 bp downstream
Rr420750	regulatory region 420750	1447 bp distal
Rr420751	regulatory region 420751	within coordinates
Tssr9483	transcription start site region 9483	932 bp downstream
Tssr9484	transcription start site region 9484	901 bp downstream
Tssr9485	transcription start site region 9485	808 bp downstream
Tssr9486	transcription start site region 9486	774 bp downstream
Tssr9487	transcription start site region 9487	6 bp downstream
Tssr9488	transcription start site region 9488	2 bp upstream
Tssr9489	transcription start site region 9489	44 bp upstream
Tssr9490	transcription start site region 9490	180 bp upstream