rs31831600 SNP Detail

Summary

• ID
  rs31831600
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:41640820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAT TGCCCCTAGT CCTAATAACA
  R
  TGTGATCTCT GGGAATTCAT GACCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45576425	mCV24873960	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss146220999	ENSMUSSNP2116502	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321093356	CHEV_4_41587853	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31831600					SNP	G	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:41640820 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14161	CpG island 14161	36 bp distal
Enho	energy homeostasis associated	518 bp upstream
Gm12406	predicted gene 12406	within coordinates
Tssr36884	transcription start site region 36884	1415 bp downstream
Tssr41357	transcription start site region 41357	837 bp upstream
Tssr41358	transcription start site region 41358	683 bp upstream
Tssr41359	transcription start site region 41359	587 bp upstream
Tssr41360	transcription start site region 41360	547 bp upstream
Tssr41361	transcription start site region 41361	508 bp upstream
Tssr41362	transcription start site region 41362	476 bp upstream
Tssr41363	transcription start site region 41363	456 bp upstream
Tssr41364	transcription start site region 41364	444 bp upstream
Tssr41365	transcription start site region 41365	418 bp upstream