rs31832473 SNP Detail

Summary

• ID
  rs31832473
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:99700568 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTAGCACT GAACGGTATG
  ACCAGCCTTG TGCTTTTCAC GTTTTACTCA CTACTGATCT TTTCTACCCT CAACACAAAG
  GCATGCTAAA GTTTCCTACA GTTGTAAATT AAAGCATTTA TCCTCATTTT ATTACTGGCT
  CACTTCTCTT CCCCATTCAC TCCCCACATT TGACACTTCT CCAACTTCTT CCCTTTAAAA
  S
  TGTGGTTTCT GAGATCTGCC AGTGTTCCAA GCAACTGAAT CCGTTAGATT CTTTTTGGTC
  CTCCTGTTTT AGTGACAGCA GTGTTTAGAG TGTATTACTT CTGTACTGCC CTCTCCCAAG
  TTCCTCTCAT TTTATAAAGA CTCTGCCTCT TCTCTTTCTA TATACCCTAA CCTGAAGTAG
  CCTGTGCTTC CTTTTCTTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49780430	NES12398431	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31832473					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49780430	NES12398431	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:99700568 () rs orientation: forward

Symbol	Name	Function Class
Kif4	kinesin family member 4	within coordinates
Tssr161616	transcription start site region 161616	511 bp downstream