rs31833166 SNP Detail

Summary

• ID
  rs31833166
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:99699793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCCTCGAA CTCAGAAATC
  TGCCTGCCTC TGCCTCCCCA GTGCTGGGAT TAAAGGCGTG TGCCACCACG CCCAGCTTAG
  ATCAACTTCT TAAAATGTCA CTTCGTTTGT GATACCTGTT CCCAAATAGA AACTGAAAGA
  TAATAGAAAC CCTGCTTATA GAATGAGCCC TAAACACTGC CCTTTGTCCC CAAGCCCTCA
  Y
  CTAGCTTCCC AACCCACACT ATCCACTCAA GTTATGTGGC CCCCACCACA TTTTCGGTTT
  CTGCTGGGTT TTGTATACTT TTAGCACAGC TCTCTCTTCC TCTTGCACAG AATACTGCAT
  GTGCCTATCC CTACACCACC CTCACAATCA GACTTTCTAT AACATGGCTT TTCTTTAAAG
  CTCAATTTGA CTTGAAGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49780433	NES12398428	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31833166					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49780433	NES12398428	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:99699793 () rs orientation: forward

Symbol	Name	Function Class
Kif4	kinesin family member 4	within coordinates
Tssr161616	transcription start site region 161616	260 bp upstream