rs31833279 SNP Detail

Summary

• ID
  rs31833279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:12825011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGCCTTTT AATTCCCGGG GCTTCCTGTT CCGGAGGCGT
  GGGTGGCGCC TCAGCCGTGG AGGGTGTTAT AGTAACCAGG CTGGGCTTTG ATGGCGGCGA
  Y
  CCCGGGACTC TCTGTAGGTA GACGGGGGGC GCCTGATGGG TTTTCAGAGA ACGAGTATCG
  ACCTAAACGA TCCTGGGAGT TGGGTCTGGG TGGCTTCGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss39330208	mCV25341280	ABI	CRAMUS_MOUSE	f	SNP		C							T
ss51593167	NES14609239	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	C	T	C	T	C	C	C	C	C
ss147089594	ENSMUSSNP7066409	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs31833279					SNP	C	C	C	C	T	C	T	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51593167	NES14609239	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:12825011 () rs orientation: forward

Symbol	Name	Function Class
6030458C11Rik	RIKEN cDNA 6030458C11 gene	276 bp upstream
Cpgi6961	CpG island 6961	within coordinates
D15Mit199	DNA segment, Chr 15, Massachusetts Institute of Technology 199	1691 bp proximal
Drosha	drosha, ribonuclease type III	within coordinates
Rr311575	regulatory region 311575	within coordinates
Rr369910	regulatory region 369910	20 bp downstream
Rr369911	regulatory region 369911	33 bp upstream
Tssr130744	transcription start site region 130744	92 bp downstream
Tssr130745	transcription start site region 130745	42 bp downstream
Tssr130746	transcription start site region 130746	18 bp downstream
Tssr133796	transcription start site region 133796	1113 bp upstream
Tssr133797	transcription start site region 133797	321 bp upstream
Tssr133798	transcription start site region 133798	271 bp upstream
Tssr133799	transcription start site region 133799	250 bp upstream