rs31834069 SNP Detail

Summary

• ID
  rs31834069
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:74595129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAGCACC TCCCCACATC
  CTGCTCTTCT CTAGGCAGCT GGTGGTGGTC AGTCACCCAG CCAACCTCAT AGGCTTTTGC
  CTGATTCTGG GGACAGACAC TTGAAGCGTG GTCCCGCTGG TGAGGGCCTG GCAGAAGTAG
  ATGGGCTAGA AAGAGCTAGG AAGGAGAAAA TAGGTTAGAA GGGCTTGGGA GAGCACTGGG
  W
  CAGATGTCAT TAATTTGGGT GTGGTTCCTG CAAGGTCACA GAGTAGGGGA TGCGATAAAG
  CAGGAGGTCC AGAGGCAGAA GGGCAGCAGC CTGGCTGCTT GCCCCTTTTC TGTGCCTTCT
  GCTTAGCGCT CACAGTGGCA CCGGGCTCTC TGAAACCTCA ACTTCCTGTC TCCCTGCAGG
  TGGAGCCCCC TGAGCTGCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39330218	mCV22743532	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	T	T
ss148149588	ENSMUSSNP2199038	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31834069					SNP	A	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74595129 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7176	CpG island 7176	1257 bp distal
Rr369952	regulatory region 369952	76 bp upstream
Rr504335	regulatory region 504335	1582 bp distal
Rr504336	regulatory region 504336	1919 bp proximal
Rr504337	regulatory region 504337	1934 bp proximal
Them6	thioesterase superfamily member 6	Intron
Tssr131584	transcription start site region 131584	1606 bp downstream
Tssr131585	transcription start site region 131585	1586 bp downstream
Tssr131586	transcription start site region 131586	1580 bp downstream