rs31834728 SNP Detail

Summary

• ID
  rs31834728
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:100429508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGGCATT TTGCTGATCA
  GGAAAAGAAA AGGGCAGAGG GAAGAGTGAC TTGAAGCTGC AAACAGGAGC CTGGCAAAGC
  CACCATCTGA GCCTCCTCTC CCGCTTTTCC TTGCTCTGCT TTGATTGGTC ATTTACTTAT
  GTCTTTCCCA TTGTTTATCG TCCGTCTATG GGTAGCTAAT TCACATCCGT CCTTCCTTTG
  R
  TTTTAAAAAT AAATGACAGC CTCTTCTGGA GAGACAGAGA AAATGCTAGA GAAATTTCTA
  AGGAGAGAGA GAGAGGGAGG GAGGGAGGGA GGGACGGAGG GAGGGAGGGA GGGAGATAGA
  GAGGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGACTGACTG ACACTTTCCC
  TGGCTACCTC AGCTAGGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss49780105	NES12398994	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs31834728					SNP	A	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49780105	NES12398994	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:100429508 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22867	CpG island 22867	857 bp distal
Gjb1	gap junction protein, beta 1	273 bp downstream
Tssr161661	transcription start site region 161661	1591 bp downstream
Tssr161662	transcription start site region 161662	1448 bp downstream
Tssr161663	transcription start site region 161663	1394 bp downstream
Tssr161664	transcription start site region 161664	1259 bp downstream
Tssr161665	transcription start site region 161665	1029 bp downstream
Tssr163884	transcription start site region 163884	1221 bp upstream