rs31834729 SNP Detail

Summary

• ID
  rs31834729
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:100429471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCCTCTG TGGCCTCCCC
  CAGGATAAGC TGGCCTTGGT TGGCATTTTG CTGATCAGGA AAAGAAAAGG GCAGAGGGAA
  GAGTGACTTG AAGCTGCAAA CAGGAGCCTG GCAAAGCCAC CATCTGAGCC TCCTCTCCCG
  CTTTTCCTTG CTCTGCTTTG ATTGGTCATT TACTTATGTC TTTCCCATTG TTTATCGTCC
  S
  TCTATGGGTA GCTAATTCAC ATCCGTCCTT CCTTTGATTT TAAAAATAAA TGACAGCCTC
  TTCTGGAGAG ACAGAGAAAA TGCTAGAGAA ATTTCTAAGG AGAGAGAGAG AGGGAGGGAG
  GGAGGGAGGG ACGGAGGGAG GGAGGGAGGG AGATAGAGAG GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49780106	NES12398993	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31834729					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49780106	NES12398993	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:100429471 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22867	CpG island 22867	820 bp distal
Gjb1	gap junction protein, beta 1	236 bp downstream
Tssr161661	transcription start site region 161661	1554 bp downstream
Tssr161662	transcription start site region 161662	1411 bp downstream
Tssr161663	transcription start site region 161663	1357 bp downstream
Tssr161664	transcription start site region 161664	1222 bp downstream
Tssr161665	transcription start site region 161665	992 bp downstream
Tssr163884	transcription start site region 163884	1184 bp upstream