rs31834790 SNP Detail

Summary

• ID
  rs31834790
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124792822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGCT ATTGTGACTC CTCACCTGCT
  Y
  GTCAGCATAG GTCATTCATT TTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47594290	NES11184866	PERLEGEN	MM_PANEL2	f	SNP		C	T	C	T	T	T	C	T	C	C
ss145839201	ENSMUSSNP7106928	ENSEMBL	ENSEMBL_Sanger	f	SNP	C				T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs31834790					SNP	C	C	T	C	T	T	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47594290	NES11184866	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124792822 () rs orientation: forward

Symbol	Name	Function Class
Gm29897	predicted gene, 29897	within coordinates
Rr672611	regulatory region 672611	479 bp proximal
Tssr80018	transcription start site region 80018	694 bp upstream
Tssr80019	transcription start site region 80019	706 bp upstream
Tssr80020	transcription start site region 80020	1049 bp upstream