rs31836136 SNP Detail

Summary

• ID
  rs31836136
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:99775538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGGCAA GCACTCCAAA
  GCCAGCTTTG GATGTCATTA AATAGGAAGG ATCTGGAGAG AGTGGGTACA CATATGACGC
  CTACAAAAAG GCTGGGCCAC TGACCTCCCA GGTATCAAAA ATAAGGGGCA ACTCCAGAAA
  CGGTTCCTCT TTTCTGGGTT TAGAATTTGT CACCTCATGA ACTCCAGAGC TCCGGGTCTG
  Y
  TCTGTGACAG CCAACCTTCC TGCTGAGCAG CATCGAAGGC TTCTATCTAC CTGCCCCAGG
  CTCCTCAGAT ACATGGAAAG GGAGACTGAG ATCTGTCCTC TATGTGGGTC CCTGATGGTC
  AAATGTCCTT TTCCCCCAGG CCTTAACCAT GGCAGATTCC CCCGGCTGCT GCTCCATCTG
  GGCCCGCTGC CTCCACTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49780382	NES12397615	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31836136					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49780382	NES12397615	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:99775538 () rs orientation: forward

Symbol	Name	Function Class
Gdpd2	glycerophosphodiester phosphodiesterase domain containing 2	within coordinates
Rr692772	regulatory region 692772	1736 bp distal
Rr692773	regulatory region 692773	1833 bp distal
Rr692774	regulatory region 692774	1152 bp distal
Tssr161620	transcription start site region 161620	1969 bp downstream
Tssr161621	transcription start site region 161621	1938 bp downstream
Tssr161622	transcription start site region 161622	1810 bp downstream
Tssr161623	transcription start site region 161623	1791 bp downstream
Tssr161624	transcription start site region 161624	1765 bp downstream
Tssr161625	transcription start site region 161625	1743 bp downstream